HeroicPandas is correct in terms of HSC, as far as I know.
The actual reason is that light is scattered more in crystalline polymers than in amorphous polymers, causing crystalline solids to appear opaque while amorphous polymers appear transparent.
It's a bit a like clean water compared with dirty water. Clean water doesn't scatter light that much but if you add dirt into it, light gets scattered erratically by suspended particles in it, resulting in opacity.